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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc6a20a, solute carrier family 6 (neurotransmitter transporter), member 20A
Sequence ID:NM_139142
Entrez Gene ID:102680
Ensembl ID:ENSMUSG00000036814

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F|9 71.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 123636121 - 123678845

 Exon Info From UCSC:
NM_139142

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40090800Full LengthBC118933solute carrier family 6 (neurotransmitter transporter), member 20A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631881  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139142 NP_631881 Q8VDB9 SNF

Related Sequences

 
mRNAGenPeptSwissProt
BC118933 AAI18934 Q8VDB9
AK140445 BAE24391 Q8VDB9
AJ428067 CAD20989 Q8VDB9
AJ964961 CAI80736 Q8VDB9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc6a20a NP_631881 R.norvegicus Slc6a20 113918   NP_579830 97
H.sapiens SLC6A20 54716 Gene Info NP_064593 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)