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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cx3cr1, chemokine (C-X3-C) receptor 1
Sequence ID:NM_009987
Entrez Gene ID:13051
Ensembl ID:ENSMUSG00000052336

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F4|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 120051253 - 120068282

NM_009987 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13651119957810119961460
36523729119977322119977399

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4017224Full LengthBC012653chemokine (C-X3-C) receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034117  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009987 NP_034117 Q8BR50
Q9Z0D9
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF102269 AAC72408 Q543X3
Q9Z0D9
BC012653 AAH12653 Q543X3
Q9Z0D9
AK035902 BAC29236 Q8CBJ0
AK044557 BAC31979 Q543X3
Q9Z0D9
AK045634 BAC32440 Q8BR50
AK137388 BAE23340 Q543X3
Q9Z0D9
AK140010 BAE24210 Q543X3
Q9Z0D9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cx3cr1 NP_034117 R.norvegicus Cx3cr1 171056   NP_598218 94
H.sapiens CX3CR1 1524 Gene Info NP_001164645 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)