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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vsx2, visual system homeobox 2
Sequence ID:NM_007701
Entrez Gene ID:12677
Ensembl ID:ENSMUSG00000021239

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 D1|12 38.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 84569827 - 84594565

NM_007701 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14618591080185911261
4625468591251985912603
5476708591722885917351
6718518593312085933300
85231808593407885936406

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4480964Full LengthBC031869visual system homeobox 2
6492679Full LengthBC058806visual system homeobox 2
6494544Full LengthBC051245visual system homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031727  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007701 NP_031727 Q80WF9
Q61412
Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
L34808 AAA60431 Q80WF9
Q61412
BC031869 AAH31869 Q80WF9
Q61412
BC051245 AAH51245 Q80WF9
Q61412
BC058806 AAH58806 Q6PDC1
AK143461 BAE25386 Q80WF9
Q61412
AK162139 BAE36748 Q3TSC7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vsx2 NP_031727 R.norvegicus Vsx2 171360   NP_001162599 98
H.sapiens VSX2 338917 Gene Info NP_878314 97
C.elegans ceh-10 175811   NP_498251 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)