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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rnf43, ring finger protein 43
Sequence ID:NM_172448
Entrez Gene ID:207742
Ensembl ID:ENSMUSG00000034177

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 87699896 - 87735538

NM_172448 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21378747658887476723
1388698747763787478368
8709928753187987532001
99310678754065187540725
106811998754083787540968
120013048754152787541631
130514668754290187543062
146715698754363387543735
157029288754452887545886
292943128754765787549040

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130234Full LengthBC131957ring finger protein 43
3588131IncompleteBC004781ring finger protein 43
3989267IncompleteBC075707ring finger protein 43
5025887IncompleteBC029717ring finger protein 43

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766036  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_172448 NP_766036 Q5NCP0 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
BC004781 AAH04781 Q99KA9
BC029717 AAH29717 Q5NCP0
BC075707 AAH75707 Q5NCP0
BC131957 AAI31958 A3KMI3
AK028750 BAC26097 Q5NCP0
AK032782 BAC28018 Q5NCP0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rnf43 NP_766036 R.norvegicus Rnf43 303412   NP_001129393 93
H.sapiens RNF43 54894 Gene Info NP_060233 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)