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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Atg4d, autophagy related 4D, cysteine peptidase
Sequence ID:NM_153583
Entrez Gene ID:235040
Ensembl ID:ENSMUSG00000002820

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21265298 - 21274837

NM_153583 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14192106974221070160
4205032107118221071265
5046772107135021071523
6789542107269421072970
95510192107304821073112
102011502107516321075293
115112292107691121076989
123013062107707921077155
130714262107723421077353
142725412107769721078811

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4208700Full LengthBC030861autophagy-related 4D (yeast)
6490007Full LengthBC069851autophagy-related 4D (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_705811  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145416 NP_663391 Q8VDQ9 Krr1
NM_153583 NP_705811 Q8BGV9 Peptidase_C54

Related Sequences

 
mRNAGenPeptSwissProt
BC021438 AAH21438 Q8VDQ9
BC030861 AAH30861 Q3U4N6
Q8BGV9
BC069851 AAH69851 Q8BGV9
AK036571 BAC29484 Q8BGV9
AK080353 BAC37886 Q78QY6
AK081002 BAC38110 Q8BGV9
AK081605 BAC38269 Q8BGV9
AK154130 BAE32395 Q3U4N6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg4d NP_705811 H.sapiens ATG4D 84971 Gene Info NP_116274 86
A.gambiae AgaP_AGAP004023 1278841   XP_554420 49
D.melanogaster CG6194 41868   NP_650452 49
C.elegans atg-4.2 3565022   NP_502208 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)