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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tcf7l1, transcription factor 7 like 1 (T cell specific, HMG box)
Sequence ID:NM_001079822
NM_009332
Entrez Gene ID:21415
Ensembl ID:ENSMUSG00000055799

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C1|6 30.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 72627166 - 72634232

 Exon Info From UCSC:
NM_001079822
NM_009332

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40109611Full LengthBC128305transcription factor 3
40109613Full LengthBC128306transcription factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033358  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001079822 NP_001073290    
NM_009332 NP_033358 Q9Z1J1 HMG_box
CTNNB1_binding

Related Sequences

 
mRNAGenPeptSwissProt
AF057691 AAC13696 Q9Z1J1
BC128305 AAI28306 A1A549
BC128306 AAI28307 A1A550
AK164532 BAE37826 Q3TPB1
AJ223069 CAA11070 Q9Z1J1
AJ223233 CAA11201 Q9Z1J1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tcf7l1 NP_001073290 R.norvegicus Tcf3 312451   NP_001101335 98
H.sapiens TCF7L1 83439 Gene Info NP_112573 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)