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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gpc6, glypican 6
Sequence ID:NM_001079844
NM_011821
Entrez Gene ID:23888
Ensembl ID:ENSMUSG00000058571

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 E4|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 116925429 - 117976544

 Exon Info From UCSC:
NM_001079844
NM_011821

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5008374Full LengthBC023448glypican 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035951  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001079844 NP_001073313    
NM_011821 NP_035951 Q9R087
Q3V1C9
Glypican

Related Sequences

 
mRNAGenPeptSwissProt
AF105268 AAD55750 Q9R087
Q3V1C9
BC023448 AAH23448 Q8R3X6
AK032866 BAC28060 Q8BSI4
AK132531 BAE21222 Q9R087
Q3V1C9
AK149312 BAE28806 Q8R3X6
AK164668 BAE37868 Q3TP69

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gpc6 NP_035951 H.sapiens GPC6 10082 Gene Info NP_005699 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)