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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smg5, Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Sequence ID:NM_178246
Entrez Gene ID:229512
Ensembl ID:ENSMUSG00000001415

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 88336280 - 88362337

 Exon Info From UCSC:
NM_178246

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3992000Full LengthBC024683Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
30734268Full LengthBC100408Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
4192637IncompleteBC048378Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
5101421IncompleteBC024089Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
30429643IncompleteBC066787Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178246 NP_839977 Q6ZPY2  

Related Sequences

 
mRNAGenPeptSwissProt
BC024683 AAH24683 Q6ZPY2
BC100408 AAI00409 Q6ZPY2
AK129286 BAC98096 Q6ZPY2
AK133688 BAE21784 Q3UZS1
AK155787 BAE33436 Q3U1Q7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smg5 NP_839977 R.norvegicus Smg5 681012   XP_001059906 98
H.sapiens SMG5 23381 Gene Info NP_056142 93
D.melanogaster Smg5 34804   NP_609685 28
A.gambiae AgaP_AGAP008181 1277789   XP_317286 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)