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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Sequence ID:NM_001252457
Entrez Gene ID:53817
Ensembl ID:ENSMUSG00000019432

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.12 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35243239 - 35253498

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498520Full LengthBC011067HLA-B-associated transcript 1A
5359825Full LengthBC024859HLA-B-associated transcript 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062667  

Protein Infomation

NM_001252457 NP_001239386      
NM_019693 NP_062667 Q9Z1N5 EC DEAD
NM_207648 NP_997531 P79568   MHC_I

Related Sequences

AF118128 AAD13115 Q9Z1N5 EC
BC011067 AAH11067 Q9Z1N5 EC
BC024859 AAH24859 Q9Z1N5 EC
BC148635 AAI48636    
BC156754 AAI56755    
AY255786 AAP91685 Q9Z1N5 EC
AY255787 AAP91686 Q9Z1N5 EC
AK051034 BAC34505 Q9Z1N5 EC
AK088867 BAC40624 Q9Z1N5 EC
AK171507 BAE42496 Q3TB18  
XM_003946319 XP_003946368    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Ddx39b NP_062667 H.sapiens DDX39B 7919 Gene Info NP_004631 100
R.norvegicus Ddx39b 114612   NP_579834 100
A.gambiae AgaP_AGAP009075 1280031   XP_319825 86
D.melanogaster Hel25E 33781   NP_723089 86
S.pombe uap56 2542433   NP_594261 71
N.crassa NCU09076 3881069   XP_964893 67
S.cerevisiae SUB2 851475   NP_010199 66
P.falciparum UAP56 812689   XP_001349607 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)