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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx1b, syntaxin 1B
Sequence ID:NM_024414
Entrez Gene ID:56216
Ensembl ID:ENSMUSG00000030806

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 127807244 - 127824321

NM_024414 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1546134950357134950902
547657134951169134951279
658795134951360134951497
796869134954168134954241
870978134954413134954521
9791052134954676134954749
10531127134958426134958500
11281227134958577134958676
12281302134958859134958933
13031574134967773134968044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130319Full LengthBC132042syntaxin 1B
40130345Full LengthBC132068syntaxin 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077725  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024414 NP_077725 P61264 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC132042 AAI32043 P61264
BC132068 AAI32069 P61264
D29743 BAA06162 P61264
D45207 BAA25986 P61264

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx1b NP_077725 H.sapiens STX1B 112755 Gene Info NP_443106 100
R.norvegicus Stx1b 24923   NP_036832 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)