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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pax5, paired box gene 5
Sequence ID:NM_008782
Entrez Gene ID:18507
Ensembl ID:ENSMUSG00000014030

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B1|4 20.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 44531505 - 44710440

NM_008782 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1774454437744544453
781644455029144550377
1652664458287344582974
2673964462258644622715
3975724465841944658594
5737014469231144692439
7027664469554044695604
7679644470470644704903
96511304471039344710558
113112084472323444723311

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063396Full LengthBC157081paired box gene 5
100062425BC156134paired box gene 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032808  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008782 NP_032808 Q02650 PAX

Related Sequences

 
mRNAGenPeptSwissProt
M97013 AAA37325 Q02650
BC156134 AAI56135  
BC157081 AAI57082  
JX065130 AFN57632 I6YXB9
JX065131 AFN57633 I6XNZ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pax5 NP_032808 H.sapiens PAX5 5079 Gene Info NP_057953 99
R.norvegicus RGD1565236 500453   NP_001102731 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)