Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2-T23, histocompatibility 2, T region locus 23
Sequence ID:XM_003945738
XM_003945747
NM_010398
Entrez Gene ID:15040
Ensembl ID:ENSMUSG00000067212

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.73 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 36030144 - 36032701

NM_010398 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12553616692136167175
2562853616731536167344
2864023616752236167638
4036783616776636168041
6799543616858236168857
95512243616909736169366
122513173616955336169645

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3709267Full LengthBC005648histocompatibility 2, T region locus 23
30842866Full LengthBC099472histocompatibility 2, T region locus 23

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034528  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010398 NP_034528 P06339
Q3V014
MHC_I
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
L00606 AAA16900 Q31153
M11284 AAA39693 P06339
Q3V014
AF082510 AAD12244 O98032
AF100699 AAD28338 Q9TQL9
AF100700 AAD28339  
AF100702 AAD28341 Q9TQM0
AF100703 AAD28342 Q9TQM1
AF057279 AAD31381 Q9TQB1
AF041855 AAD53968 Q31153
BC005648 AAH05648 Q31153
BC099472 AAH99472 Q4FZH9
BC160245 AAI60245  
HQ258996 ADZ73480 F2WVG7
AK013097 BAB28645 Q9CZ20
AK133502 BAE21691 P06339
Q3V014
AB359230 BAF76150 A7VMS5
X65748 CAA46651 Q62142
XM_003945738 XP_003945787  
XM_003945747 XP_003945796  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-T23 NP_034528 M.musculus C920025E04Rik 667803   XP_997668 92
R.norvegicus RT1-S3 294228   NP_001008886 80
H.sapiens HLA-E 3133 Gene Info NP_005507 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)