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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nphs1, nephrosis 1 homolog, nephrin (human)
Sequence ID:NM_019459
Entrez Gene ID:54631
Ensembl ID:ENSMUSG00000006649

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 30458462 - 30486716

 Exon Info From UCSC:
NM_019459

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062239Full LengthBC156756nephrosis 1 homolog, nephrin (human)
100016156BC152916nephrosis 1 homolog, nephrin (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062332  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019459 NP_062332 Q9QZS7 fn3
ig
I-set
V-set
C2-set_2

Related Sequences

 
mRNAGenPeptSwissProt
AF168466 AAF03368 Q9QZS7
AF172256 AAF91087 Q9QZS7
BC152916 AAI52917 Q9QZS7
BC156756 AAI56757  
AF191090 AAK38483 Q9QZS7
AB513652 BAI63574 Q9QZS7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nphs1 NP_062332 R.norvegicus Nphs1 64563   NP_072150 94
H.sapiens NPHS1 4868 Gene Info NP_004637 83
A.gambiae AgaP_AGAP010742 1272555   XP_311455 33
D.melanogaster sns 44097   NP_788286 31
C.elegans syg-2 181561   NP_510435 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)