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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cnga1, cyclic nucleotide gated channel alpha 1
Sequence ID:NM_007723
Entrez Gene ID:12788
Ensembl ID:ENSMUSG00000067220

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 C3.2|5 41.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 72642287 - 72644274

NM_007723 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1318457299493572996767
184619527300069373000799
195320607300204773002154
206121717300339973003509
217222137300359973003640
221422767300796073008022
227723787300940673009507
237924997301025073010370
250027507303374073033990

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055873Full LengthBC141261cyclic nucleotide gated channel alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031749  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007723 NP_031749 P29974 cNMP_binding
Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
M84742 AAA37425 P29974
U19715 AAA85700 P29974
U19716 AAA85701 P29974
U19717 AAA85702 P29974
BC085319 AAH85319 Q5U408
BC141261 AAI41262 P29974

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cnga1 NP_031749 R.norvegicus Cnga1 85259   NP_445949 97
H.sapiens CNGA1 1259 Gene Info NP_001136036 91
C.elegans tax-4 176297   NP_499033 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)