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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cnn1, calponin 1
Sequence ID:NM_009922
Entrez Gene ID:12797
Ensembl ID:ENSMUSG00000001349

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 A2-A4

Chromosomal Position (from UCSC)

Chromosomal Position:9: 22099280 - 22109630

NM_009922 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11662190369621903861
1672882190558421905705
2893552190874921908815
3564932190981321909950
4946042191011321910223
6057512191219421912340
75219872191242921913664

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861885Full LengthBC138863calponin 1
8861886Full LengthBC138864calponin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034052  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009922 NP_034052 Q08091
Q8CBQ2
CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
BC138863 AAI38864 B2RSH3
BC138864 AAI38865 B2RSH3
AK035548 BAC29100 Q8CBQ2
Z19542 CAA79602 Q08091

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cnn1 NP_034052 R.norvegicus Cnn1 65204   NP_113935 99
H.sapiens CNN1 1264 Gene Info NP_001290 98
D.melanogaster CG5023 42400   NP_650867 43
A.gambiae AgaP_AGAP000749 1272338   XP_311284 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)