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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col18a1, collagen, type XVIII, alpha 1
Sequence ID:NM_001109991
NM_009929
Entrez Gene ID:12822
Ensembl ID:ENSMUSG00000001435

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B5-C1|10 41.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 77053197 - 77055605

 Exon Info From UCSC:
NM_001109991
NM_009929

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6332464Full LengthBC064817collagen, type XVIII, alpha 1
30355615Full LengthBC066080collagen, type XVIII, alpha 1
2645388IncompleteBC008227procollagen, type XVIII, alpha 1
5310177IncompleteBC043697procollagen, type XVIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034059  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001109991 NP_001103461    
NM_009929 NP_034059   Collagen
Endostatin

Related Sequences

 
mRNAGenPeptSwissProt
L22545 AAA19787 P39061
U03714 AAA20657 P39061
L16898 AAA37434 P39061
U11636 AAC52178 P39061
U11637 AAC52179 P39061
AF257775 AAF69009 P39061
BC064817 AAH64817 P39061
BC066080 AAH66080 P39061
D17546 BAA04483 P39061
AK014292 BAB29249 P39061
AK031798 BAC27554 P39061

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col18a1 NP_001103461 R.norvegicus Col18a1 85251   XP_241632 91
H.sapiens COL18A1 80781 Gene Info NP_085059 76
A.gambiae AgaP_AGAP006516 1277113   XP_316546 46
D.melanogaster mp 38769   NP_001163358 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)