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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Avpr1a, arginine vasopressin receptor 1A
Sequence ID:NM_016847
Entrez Gene ID:54140
Ensembl ID:ENSMUSG00000020123

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10|10 D3

Chromosomal Position (from UCSC)

Chromosomal Position:10: 122448571 - 122453340

NM_016847 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11291121885554121886844
12922671121889129121890508

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4220075Full LengthBC024149arginine vasopressin receptor 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058543  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016847 NP_058543 Q3U1H9
Q62463
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC024149 AAH24149 Q3U1H9
Q62463
D49729 BAA08566 Q3U1H9
Q62463
D49730 BAA08567 Q62463
AK137203 BAE23266 Q3U1H9
Q62463
AK149578 BAE28970 Q3UEE1
AK155952 BAE33518 Q3U1H9
Q62463

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Avpr1a NP_058543 R.norvegicus Avpr1a 25107   NP_444178 92
H.sapiens AVPR1A 552 Gene Info NP_000697 85
C.elegans T07D10.2 188227   NP_493193 33
C.elegans F14F4.1 184471   NP_510477 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)