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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccs, copper chaperone for superoxide dismutase
Sequence ID:NM_016892
Entrez Gene ID:12460
Ensembl ID:ENSMUSG00000034108

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 4825497 - 4839235

NM_016892 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
129948253654825663
30040348257694825872
40448148259434826020
48254248328324832892
54372048333404833517
72185848341724834309
85993148388304838902
932105748391964839321

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4024140Full LengthBC026938copper chaperone for superoxide dismutase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058588  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016892 NP_058588 Q9WU84
Q543K2
Sod_Cu
HMA

Related Sequences

 
mRNAGenPeptSwissProt
AF121906 AAD23832 Q9WU84
Q543K2
AF173379 AAF70242 Q9WU84
Q543K2
BC026938 AAH26938 Q9WU84
Q543K2
AK010264 BAB26806 Q9WU84
AK050072 BAC34057 Q9WU84
Q543K2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccs NP_058588 R.norvegicus Ccs 84485   NP_445877 95
H.sapiens CCS 9973 Gene Info NP_005116 87
D.melanogaster CCS 46035   NP_652029 51
A.gambiae AgaP_AGAP007026 1270080   XP_308747 45
A.thaliana CCS 837808   NP_563910 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)