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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cox6a1, cytochrome c oxidase subunit VIa polypeptide 1
Sequence ID:NM_007748
Entrez Gene ID:12861
Ensembl ID:ENSMUSG00000041697

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5 60.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 115345654 - 115348956

NM_007748 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1273115795662115795934
274416115798573115798715
417533115798847115798963

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3487598Full LengthBC003807cytochrome c oxidase, subunit VI a, polypeptide 1
6439987Full LengthBC052816cytochrome c oxidase, subunit VI a, polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031774  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007748 NP_031774 Q9DCW5 COX6A

Related Sequences

 
mRNAGenPeptSwissProt
U08440 AAA17836 P43024
L06465 AAA53066 P43024
Q9DCW5
BC003807 AAH03807 Q9DCW5
BC052816 AAH52816 Q9DCW5
AK002402 BAB22073 Q9DCW5
AK019318 BAB31662 Q9DCW5
AK166496 BAE38808 Q9DCW5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cox6a1 NP_031774 R.norvegicus Cox6a1 25282   NP_036946 93
H.sapiens COX6A1 1337 Gene Info NP_004364 84
A.gambiae AgaP_AGAP000851 1277364   XP_316821 59
D.melanogaster levy 37728   NP_611805 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)