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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc9a1, solute carrier family 9 (sodium/hydrogen exchanger), member 1
Sequence ID:NM_016981
Entrez Gene ID:20544
Ensembl ID:ENSMUSG00000028854

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3-E|4 64.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 133369771 - 133423698

 Exon Info From UCSC:
NM_016981

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5702902Full LengthBC052708solute carrier family 9 (sodium/hydrogen exchanger), member 1
6529306Full LengthBC051431solute carrier family 9 (sodium/hydrogen exchanger), member 1
3500839IncompleteBC004687solute carrier family 9 (sodium/hydrogen exchanger), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058677  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016981 NP_058677 Q3UDC9
Q61165
Na_H_Exchanger

Related Sequences

 
mRNAGenPeptSwissProt
U51112 AAA92976 Q3UDC9
Q61165
BC004687 AAH04687 Q99KF4
BC051431 AAH51431 Q80X31
BC052708 AAH52708 Q7TSV2
AK150135 BAE29332 Q3UDC9
Q61165
AK154857 BAE32882 Q3U3A6
AK165501 BAE38221 Q3TN68

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc9a1 NP_058677 R.norvegicus Slc9a1 24782   NP_036784 97
H.sapiens SLC9A1 6548 Gene Info NP_003038 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)