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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Aptx, aprataxin
Sequence ID:NM_001025445
NM_001025444
NM_025545
Entrez Gene ID:66408
Ensembl ID:ENSMUSG00000028411

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 B1

Chromosomal Position (from UCSC)

Chromosomal Position:4: 40686470 - 40697355

 Exon Info From UCSC:
NM_001025444
NM_025545

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3994375Full LengthBC021872aprataxin
3666603IncompleteBC071213aprataxin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079821  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001025444 NP_001020615    
NM_025545 NP_079821 Q7TQC5 HIT

Related Sequences

 
mRNAGenPeptSwissProt
BC021872 AAH21872 Q7TQC5
BC071213 AAH71213 Q6IR21
AY040780 AAK91771 Q7TQC5
AY208844 AAP86334 Q7TQC5
AK005286 BAB23933 Q7TQC5
AK010516 BAB26998 Q7TQC5
AK077351 BAC36763 Q7TQC5
AK088928 BAC40657 Q7TQC5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aptx NP_079821 R.norvegicus Aptx 259271   NP_683687 93
H.sapiens APTX 54840 Gene Info NP_001182177 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)