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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tcf4, transcription factor 4
Sequence ID:NM_001083967
NM_013685
Entrez Gene ID:21413
Ensembl ID:ENSMUSG00000053477

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 E2|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 69593416 - 69683252

 Exon Info From UCSC:
NM_001083967
NM_013685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4014231Full LengthBC014293transcription factor 4
5708370Full LengthBC043050transcription factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038713  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083967 NP_001077436    
NM_013685 NP_038713 Q60722 HLH

Related Sequences

 
mRNAGenPeptSwissProt
S75870 AAB32662 Q60722
U16321 AAC52414 Q91YV0
Q60722
U16322 AAC52415 Q60722
BC014293 AAH14293 Q91YV0
BC043050 AAH43050 Q60722
AK014343 BAB29285 Q91XK1
AK028748 BAC26095 Q8CE98
AK051958 BAC34821 Q8BPX7
AK081012 BAC38116 Q60722
AK133885 BAE21912 Q3UZE5
AK145285 BAE26343 Q3ULV5
AK151433 BAE30396 Q91YV0
X91753 CAA62868 Q60722

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tcf4 NP_038713 R.norvegicus Tcf4 84382   NP_445821 99
H.sapiens TCF4 6925 Gene Info NP_001077431 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)