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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cst3, cystatin C
Sequence ID:NM_009976
Entrez Gene ID:13010
Ensembl ID:ENSMUSG00000027447

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2 84.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 148871959 - 148875377

NM_009976 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
7318148697467148697778
319432148698552148698665
433748148700888148701203

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3593373Full LengthBC002072cystatin C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034106  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009976 NP_034106 P21460 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
M59470 AAA63298 P21460
AF311741 AAG40283 Q9EPX9
BC002072 AAH02072 P21460
AF483486 AAL90760 P21460
AF483487 AAL90761 P21460
AK002438 BAB22101 P21460
AK013676 BAB28949 P21460
AK014368 BAB29303 P21460
AK131728 BAE20785 P21460
AK146333 BAE27088 P21460
AK151160 BAE30165 P21460
AK153533 BAE32071 Q3U5K7
AK161856 BAE36608 P21460
AK166430 BAE38771 P21460

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cst3 NP_034106 R.norvegicus Cst3 25307   NP_036969 89
H.sapiens CST3 1471 Gene Info NP_000090 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)