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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rph3al, rabphilin 3A-like (without C2 domains)
Sequence ID:NM_029548
Entrez Gene ID:380714
Ensembl ID:ENSMUSG00000020847

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11|11 B4

Chromosomal Position (from UCSC)

Chromosomal Position:11: 75832164 - 75911026

NM_029548 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1577564565975645715
582047564690375647049
2053187564826475648377
3194937566780575667979
4945807569245075692536
5817107572001975720148
7118547572241275722555
8559317572445175724527

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40134813Full LengthBC127960rabphilin 3A-like (without C2 domains)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083824  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029548 NP_083824 Q768S4 RPH3A_effector

Related Sequences

 
mRNAGenPeptSwissProt
BC127960 AAI27961 Q768S4
AK018335 BAB31169 Q768S4
AB112925 BAD07030 Q768S4
AB158403 BAD18853 Q768S4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rph3al NP_083824 R.norvegicus Rph3al 171123   NP_598275 92
H.sapiens RPH3AL 9501 Gene Info NP_001177340 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)