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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tmed2, transmembrane emp24 domain trafficking protein 2
Sequence ID:NM_019770
Entrez Gene ID:56334
Ensembl ID:ENSMUSG00000029390

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 124540828 - 124549243

NM_019770 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1251124990799124991049
252444124992980124993172
445552124996904124997011
5531975124999089125000511

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6528722Full LengthBC083140transmembrane emp24 domain trafficking protein 2
8861313Full LengthBC138294transmembrane emp24 domain trafficking protein 2
40130254Full LengthBC131977transmembrane emp24 domain trafficking protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062744  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019770 NP_062744 Q9R0Q3 EMP24_GP25L

Related Sequences

 
mRNAGenPeptSwissProt
BC083140 AAH83140 Q9R0Q3
BC131977 AAI31978 A2RS53
BC138294 AAI38295 A2RS53
AB025218 BAA84689 Q9R0Q3
AK075642 BAC35876 Q8BPI2
AK089965 BAC41019 Q8C1Z9
AK150560 BAE29659 Q3U9H7
AK151788 BAE30689 Q3U9H7
AK168235 BAE40185 Q3THL1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tmed2 NP_062744 M.musculus Gm10698 100042343 Gene Info XP_001478063 100
R.norvegicus Tmed2 65165   NP_113910 100
H.sapiens TMED2 10959 Gene Info NP_006806 99
C.elegans sel-9 179213   NP_505145 70
A.gambiae AgaP_AGAP004743 1278482   XP_318076 63
D.melanogaster CHOp24 31382   NP_572165 62
N.crassa NCU08339 3881407   XP_965242 41
S.cerevisiae EMP24 852675   NP_011315 35
S.pombe emp24 2539350   NP_588020 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)