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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sigmar1, sigma non-opioid intracellular receptor 1
Sequence ID:NM_011014
Entrez Gene ID:18391
Ensembl ID:ENSMUSG00000036078

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 A5-B2

Chromosomal Position (from UCSC)

Chromosomal Position:4: 41740626 - 41741252

NM_011014 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
110854168536841686452
108611784168742241687514
117913794168764841687848
138015914168797441688185

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3484605Full LengthBC002000sigma non-opioid intracellular receptor 1
5123891Full LengthBC019930sigma non-opioid intracellular receptor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035144  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011014 NP_035144 O55242 ERG2_Sigma1R

Related Sequences

 
mRNAGenPeptSwissProt
AF004927 AAC33306 O55242
AF030198 AAC39951 O55242
AF226605 AAF64281 O55242
BC002000 AAH02000 O55242
BC019930 AAH19930 O55242
AY390764 AAR27306 A2AMS0
AY390765 AAR27307 B7ZJH6
AY390766 AAR27308 B7ZJH7
AY390768 AAR27310 B7ZJH9
AK154300 BAE32499 O55242
AK159886 BAE35455 O55242
AB721301 BAM15776 I4DCY6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sigmar1 NP_035144 R.norvegicus Sigmar1 29336   NP_112258 93
H.sapiens SIGMAR1 10280 Gene Info NP_005857 91
S.cerevisiae ERG2 855242   NP_013929 44
S.pombe erg2 2541992   NP_593324 38
N.crassa NCU04156 3877419   XP_961312 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)