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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rps6, ribosomal protein S6
Sequence ID:NM_009096
Entrez Gene ID:20104
Ensembl ID:ENSMUSG00000028495

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 C3

Chromosomal Position (from UCSC)

Chromosomal Position:4: 86854662 - 86857334

NM_009096 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18578650000286500858
85810048650177086501916
100512158650204986502259
121613478650263186502762
134813948650322486503270

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3481640Full LengthBC010604ribosomal protein S6
3666815Full LengthBC092050ribosomal protein S6
4459055Full LengthBC090392ribosomal protein S6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009096 NP_033122 Q5BLK1
P62754
Ribosomal_S6e

Related Sequences

 
mRNAGenPeptSwissProt
BC010604 AAH10604 Q5BLK1
P62754
BC090392 AAH90392 Q5BLK1
P62754
BC092050 AAH92050 Q5BLK1
P62754
AK012284 BAB28142 Q5BLK1
P62754
AK012828 BAB28498 Q5BLK1
P62754
AK013333 BAB28796 Q5BLK1
P62754
AK028205 BAC25813 Q8BT09
AK050609 BAC34340 Q5BLK1
P62754
AK146952 BAE27561 Q5BLK1
P62754
AK161991 BAE36670 Q5BLK1
P62754
AK166680 BAE38939 Q3TL53
AK166727 BAE38974 Q5BLK1
P62754
AK168496 BAE40383 Q5BLK1
P62754
Y00348 CAA68430 Q5BLK1
P62754

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps6 NP_033122 H.sapiens RPS6 6194 Gene Info NP_001001 100
M.musculus Gm13654 667739   XP_001003926 100
R.norvegicus Rps6 29304   NP_058856 100
D.melanogaster RpS6 31700   NP_511073 76
N.crassa NCU08502 3879571   XP_963431 71
A.gambiae AgaP_AGAP002919 1273045   XP_311986 70
S.pombe rps601 2542870   NP_592833 70
S.pombe rps602 2543581   NP_594138 70
A.thaliana RPS6 829298   NP_194898 68
A.thaliana EMB3010 830900   NP_196598 68
S.cerevisiae RPS6A 856015   NP_015235 64
S.cerevisiae RPS6B 852479   NP_009740 64
C.elegans rps-6 173260   NP_493435 60
P.falciparum PF13_0228 814195   XP_001350141 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)