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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd44, CD44 antigen
Sequence ID:NM_001039150
NM_001039151
NM_001177785
NM_001177786
NM_001177787
NM_009851
Entrez Gene ID:12505
Ensembl ID:ENSMUSG00000005087

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E2|2 56.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 102813993 - 102901448

 Exon Info From UCSC:
NM_001039150
NM_001039151
NM_001177785
NM_001177786
NM_001177787
NM_009851

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4910789Full LengthBC051388CD44 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033981  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039150 NP_001034239    
NM_001039151 NP_001034240    
NM_001177785 NP_001171256    
NM_001177786 NP_001171257    
NM_001177787 NP_001171258    
NM_009851 NP_033981   Xlink

Related Sequences

 
mRNAGenPeptSwissProt
L13611 AAA37145 P15379
M27129 AAA37406 P15379
M27130 AAA37407 P15379
Q3U8S1
M30655 AAA39922 P15379
J05163 AAA39923 P15379
U57611 AAB08756 P15379
U57610 AAC52804 P15379
BC005676 AAH05676 P15379
Q3U8S1
BC051388 AAH51388 Q80X37
AK045226 BAC32269 P15379
Q3U8S1
AK144125 BAE25715 Q3UNN2
AK152099 BAE30946 Q3U8S1
AK154411 BAE32566 Q3U468
AK166320 BAE38703 Q3TLT9
X66081 CAA46880 P15379
X66082 CAA46881 P15379
X66083 CAA46882 P15379
X66084 CAA46883 P15379
X69724 CAA49380 P15379
AJ251594 CAB61888 P15379
CT010324 CAJ18532 Q80X37

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd44 NP_033981 R.norvegicus Cd44 25406   NP_037056 91
H.sapiens CD44 960 Gene Info NP_000601 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta