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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slc22a5, solute carrier family 22 (organic cation transporter), member 5
Sequence ID:NM_011396
Entrez Gene ID:20520
Ensembl ID:ENSMUSG00000018900

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.3|11 28.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 53865653 - 53891598

NM_011396 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1913695367804753679397
137015055367973853679873
150616885368102453681206
168919035368272353682937
190420045368506953685169
200521315368716953687295
213223035368843653688607
230424585368951053689664
245925625369716253697265
256331195370464853705204

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4981427Full LengthBC031118solute carrier family 22 (organic cation transporter), member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035526  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011396 NP_035526 Q9Z0E8
Q5SX17
MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
AF111425 AAC99787 Q9Z0E8
Q5SX17
AF110417 AAD54060 Q9Z0E8
Q5SX17
BC031118 AAH31118 Q9Z0E8
Q5SX17
AB015800 BAA36590 Q9Z0E8
Q5SX17
AK140640 BAE24433 Q3USA0
AK167451 BAE39537 Q9Z0E8
Q5SX17

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc22a5 NP_035526 R.norvegicus Slc22a5 29726   NP_062142 97
H.sapiens SLC22A5 6584 Gene Info NP_003051 85
A.thaliana 2-Oct 844274   NP_178054 35
A.thaliana 3-Oct 838209   NP_173089 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)