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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Isl1, ISL1 transcription factor, LIM/homeodomain
Sequence ID:NM_021459
Entrez Gene ID:16392
Ensembl ID:ENSMUSG00000042258

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D2.3|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 116299479 - 116309422

NM_021459 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11327117088477117089803
13281495117091818117091985
14961782117093253117093539
17832042117095425117095684
20432232117098481117098670
22332526117099602117099895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130540Full LengthBC132263ISL1 transcription factor, LIM/homeodomain
40130886Full LengthBC132609ISL1 transcription factor, LIM/homeodomain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067434  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021459 NP_067434 Q8BTH7 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC132263 AAI32264 A2RSV5
BC132609 AAI32610 A2RSV5
EU704681 ACD65417 B2ZUN4
AK090263 BAC41153 Q8BTH7
AB104633 BAC57891 P61372
AJ132765 CAB38446 P61372

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Isl1 NP_067434 H.sapiens ISL1 3670 Gene Info NP_002193 100
R.norvegicus Isl1 64444   NP_059035 100
A.gambiae AgaP_AGAP010209 1279631   XP_319393 68
D.melanogaster tup 35147   NP_476775 67
C.elegans lim-7 172236   NP_491668 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)