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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tpi1, triosephosphate isomerase 1
Sequence ID:NM_009415
Entrez Gene ID:21991
Ensembl ID:ENSMUSG00000023456

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F2|6 60.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 124810720 - 124814158

NM_009415 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1796124760609124761404
797884124761534124761621
885970124761899124761984
9711103124762421124762553
11041188124762638124762722
11891312124762807124762930
13131601124764025124764313

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5693696Full LengthBC046761triosephosphate isomerase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033441  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009415 NP_033441 P17751 EC 5.3.1.1 TIM

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC046761 AAH46761 P17751 EC 5.3.1.1
AK008373 BAB25634 P17751 EC 5.3.1.1
AK010808 BAB27194 P17751 EC 5.3.1.1
AK146013 BAE26832 P17751 EC 5.3.1.1
AK149768 BAE29073 P17751 EC 5.3.1.1
AK150735 BAE29810 P17751 EC 5.3.1.1
AK159741 BAE35334 P17751 EC 5.3.1.1
AK167437 BAE39523 P17751 EC 5.3.1.1
AK168446 BAE40350 P17751 EC 5.3.1.1
AK168756 BAE40594 P17751 EC 5.3.1.1
X53333 CAA37420 P17751 EC 5.3.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tpi1 NP_033441 H.sapiens TPI1 7167 Gene Info NP_001152759 91
A.gambiae AgaP_AGAP001630 1281542   XP_321467 66
D.melanogaster Tpi 43582   NP_788764 64
C.elegans tpi-1 174844   NP_496563 62
A.thaliana TPI 824710   NP_191104 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)