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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox7, SRY-box containing gene 7
Sequence ID:NM_011446
Entrez Gene ID:20680
Ensembl ID:ENSMUSG00000063060

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14|14 C3

Chromosomal Position (from UCSC)

Chromosomal Position:14: 63943705 - 63950732

NM_011446 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12886456254264562829
28932666456659164569568

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130213Full LengthBC131936SRY-box containing gene 7
40131228Full LengthBC145925SRY-box containing gene 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035576  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011446 NP_035576 P40646
Q3U1W5
HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC131936 AAI31937 P40646
Q3U1W5
BC145925 AAI45926 Q3U1W5
AB023419 BAA78765 P40646
Q3U1W5
AK155670 BAE33378 P40646
Q3U1W5
AK156497 BAE33732 Q3U0W9
X65660 CAA46611 P40646

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox7 NP_035576 R.norvegicus Sox7 290317   NP_001099515 98
H.sapiens SOX7 83595 Gene Info NP_113627 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)