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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cyp2c39, cytochrome P450, family 2, subfamily c, polypeptide 39
Sequence ID:NM_010003
Entrez Gene ID:13098
Ensembl ID:ENSMUSG00000025003

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C3|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39510870 - 39568529

NM_010003 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12173958531139585527
2183803958766239587824
3815303958798939588138
5316913961122539611385
6928683961334339613519
86910103963534839635489
101111983963831539638502
119913403964137639641517
134118573964250239643018

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862312Full LengthBC139290cytochrome P450, family 2, subfamily c, polypeptide 39
8862313Full LengthBC139291cytochrome P450, family 2, subfamily c, polypeptide 39
5055595IncompleteBC057911cytochrome P450, family 2, subfamily c, polypeptide 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034133  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_010003 NP_034133 P56656 EC 1.14.14.1 p450

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF047726 AAD13721 P56656 EC 1.14.14.1
BC057911 AAH57911 Q6PER7  
BC139290 AAI39291 P56656 EC 1.14.14.1
BC139291 AAI39292 P56656 EC 1.14.14.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cyp2c39 NP_034133 M.musculus Cyp2c38 13097 Gene Info NP_034132 92
M.musculus Cyp2c29 13095 Gene Info NP_031841 85
R.norvegicus Cyp2c7 29298   NP_058854 81
H.sapiens CYP2C8 1558 Gene Info NP_000761 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)