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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Setx, senataxin
Sequence ID:NM_198033
Entrez Gene ID:269254
Ensembl ID:ENSMUSG00000043535

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 29179858 - 29182464

 Exon Info From UCSC:
NM_198033

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5340948IncompleteBC046382senataxin
6834956IncompleteBC058109senataxin
30355235IncompleteBC079604senataxin
100061923BC156403senataxin

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198033 NP_932150 A2AKX3  

Related Sequences

 
mRNAGenPeptSwissProt
BC046382 AAH46382 A2AKX3
BC058109 AAH58109 A2AKX3
BC079604 AAH79604 A2AKX3
BC156403 AAI56404 A2AKX3
AK044730 BAC32054 A2AKX3
AK048354 BAC33309 A2AKX3
AK077911 BAC37058 A2AKX3
AK129177 BAC97987 A2AKX3
BK001523 DAA01946 A2AKX3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Setx NP_932150 R.norvegicus Setx 362096   XP_342401 92
H.sapiens SETX 23064 Gene Info NP_055861 74
A.thaliana AT4G30100 829133   NP_194739 33
A.thaliana AT2G19120 816429   NP_179502 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)