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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col16a1, collagen, type XVI, alpha 1
Sequence ID:NM_028266
Entrez Gene ID:107581
Ensembl ID:ENSMUSG00000040690

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 130055988 - 130099224

 Exon Info From UCSC:
NM_028266

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5346676Full LengthBC027766collagen, type XVI, alpha 1
5342460IncompleteBC023940collagen, type XVI, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082542  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028266 NP_082542 Q8BLX7 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC023940 AAH23940 Q8CIF9
BC027766 AAH27766 Q8K388
AK012212 BAB28100 Q8BLX7
AK040971 BAC30765 Q8BLX7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col16a1 NP_082542 R.norvegicus Col16a1 366474   NP_001015033 95
H.sapiens COL16A1 1307 Gene Info NP_001847 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)