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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chmp1a, charged multivesicular body protein 1A
Sequence ID:NM_145606
Entrez Gene ID:234852
Ensembl ID:ENSMUSG00000000743

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 E1|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 123204270 - 123212760

NM_145606 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181503125728160125729645
15041691125730043125730230
16921820125731372125731500
18211967125731863125732009
19682045125732920125732997
20462065125734115125734134
20662188125736565125736687

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3500937Full LengthBC010524chromatin modifying protein 1A
4972627Full LengthBC036138chromatin modifying protein 1A
4977509Full LengthBC036152chromatin modifying protein 1A
5354266Full LengthBC023807chromatin modifying protein 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663581  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145606 NP_663581 Q921W0 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
BC010524 AAH10524 Q921W0
BC023807 AAH23807 Q921W0
BC036138 AAH36138 Q921W0
BC036152 AAH36152 Q921W0
AK046416 BAC32719 Q921W0
AK159830 BAE35409 Q921W0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chmp1a NP_663581 R.norvegicus Chmp1a 365024   NP_001076782 100
H.sapiens CHMP1A 5119 Gene Info NP_002759 97
S.cerevisiae DID2 853906   NP_012961 48
S.pombe did2 2539670   NP_596562 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)