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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Thbs1, thrombospondin 1
Sequence ID:NM_011580
Entrez Gene ID:21825
Ensembl ID:ENSMUSG00000040152

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 F1-F3|2 65.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 118111888 - 118125403

 Exon Info From UCSC:
NM_011580

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4018176Full LengthBC042422thrombospondin 1
6405710Full LengthBC050917thrombospondin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035710  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011580 NP_035710 Q80YQ1 EGF
TSP_1
VWC
TSP_3
TSP_C

Related Sequences

 
mRNAGenPeptSwissProt
M87276 AAA53063 P35441
BC042422 AAH42422 Q8CGB2
BC050917 AAH50917 Q80YQ1
AK145202 BAE26293 Q8CGB2
AK163092 BAE37190 Q3TR40
AK164480 BAE37804 Q3TPD3
AK164691 BAE37878 Q3TP59

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Thbs1 NP_035710 H.sapiens THBS1 7057 Gene Info NP_003237 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta