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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scrn1, secernin 1
Sequence ID:NM_027268
Entrez Gene ID:69938
Ensembl ID:ENSMUSG00000019124

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 54509107 - 54566408

NM_027268 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15475445880954459355
5487285446204254462222
7298945447069354470858
89510895447275354472947
109012925447550254475704
129314745448440654484587
147516345449821754498376
163517775451623354516375

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5252046Full LengthBC023889secernin 1
5697080IncompleteBC058619secernin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081544  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027268 NP_081544 Q9CZC8 Peptidase_C69

Related Sequences

 
mRNAGenPeptSwissProt
BC023889 AAH23889 Q9CZC8
AK012765 BAB28453 Q9CZC8
AK032573 BAC27931 Q9CZC8
AK050481 BAC34280 Q9CZC8
AK082953 BAC38706 Q9CZC8
AK129084 BAC97894 Q9CZC8
AK145904 BAE26739 Q9CZC8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scrn1 NP_081544 R.norvegicus Scrn1 502776   NP_001020234 98
H.sapiens SCRN1 9805 Gene Info NP_001138986 88
A.gambiae AgaP_AGAP001959 1281164   XP_321103 32
D.melanogaster CG10098 40851   NP_649694 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)