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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cspg4, chondroitin sulfate proteoglycan 4
Sequence ID:NM_139001
Entrez Gene ID:121021
Ensembl ID:ENSMUSG00000032911

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 56865159 - 56899135

NM_139001 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11745671291056713083
1753385673136356731526
33938905673304156736592
389143735673786456738346
437445505673879656738972
455147495674012156740319
475048845674042356740557
488550515674066156740827
505252355674439856744581
523680505674486256747676

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620570  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139001 NP_620570 Q8VHY0 Laminin_G_1
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
AF352400 AAL37505 Q8VHY0
DQ887819 ABI54130 Q09J74
AK028844 BAC26150 Q8VHY0
AK075625 BAC35866 Q8VHY0
AK220559 BAD90326 Q8VHY0
AK140986 BAE24538 Q3URZ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cspg4 NP_620570 R.norvegicus Cspg4 81651   NP_112284 95
H.sapiens CSPG4 1464 Gene Info NP_001888 84
A.gambiae AgaP_AGAP008400 1277580   XP_317052 28
D.melanogaster kon 35104   NP_609881 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)