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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ddx21, DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
Sequence ID:NM_019553
Entrez Gene ID:56200
Ensembl ID:ENSMUSG00000020075

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 32.0|10 B4-B5.1

Chromosomal Position (from UCSC)

Chromosomal Position:10: 62582112 - 62602259

 Exon Info From UCSC:
NM_019553

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5363948Full LengthBC043655DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
6412782Full LengthBC059237DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
4488898IncompleteBC030895DEAD (Asp-Glu-Ala-Asp) box polypeptide 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062426  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_019553 NP_062426 Q9JIK5 EC 3.6.4.13 DEAD
Helicase_C
GUCT

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF159131 AAD43959 Q9JIK5 EC 3.6.4.13
BC030895 AAH30895 Q8K2L4  
BC043655 AAH43655 Q9JIK5 EC 3.6.4.13
BC059237 AAH59237 Q6PCP0  
AK010281 BAB26817 Q9CWZ5  
AK012125 BAB28047 Q9CSR3  
AK145578 BAE26522 Q3ULC7  
AK160095 BAE35625 Q9JIK5 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ddx21 NP_062426 R.norvegicus Ddx21 317399   NP_001032278 87
H.sapiens DDX21 9188 Gene Info NP_004719 82
A.thaliana PRH75 836340   NP_201025 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)