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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Actl6a, actin-like 6A
Sequence ID:NM_019673
Entrez Gene ID:56456
Ensembl ID:ENSMUSG00000027671

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 A3|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 32708725 - 32726959

 Exon Info From UCSC:
NM_019673

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3491205Full LengthBC001994actin-like 6A
4209491Full LengthBC094498actin-like 6A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062647  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019673 NP_062647 Q9Z2N8 Actin

Related Sequences

 
mRNAGenPeptSwissProt
AF041476 AAC94992 Q9Z2N8
BC001994 AAH01994 Q505L1
Q9Z2N8
BC094498 AAH94498 Q505L1
Q9Z2N8
AK090154 BAC41116 Q9Z2N8
AK167905 BAE39913 Q505L1
Q9Z2N8
AK169278 BAE41036 Q3TF62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Actl6a NP_062647 R.norvegicus Actl6a 361925   NP_001034122 100
H.sapiens ACTL6A 86 Gene Info NP_004292 99
D.melanogaster Bap55 36956   NP_611209 56
A.gambiae AgaP_AGAP008687 1275530   XP_314784 54
A.thaliana ARP4 838425   NP_564051 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta