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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpsa, ribosomal protein SA
Sequence ID:NM_011029
Entrez Gene ID:16785
Ensembl ID:ENSMUSG00000032518

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F4|9 71.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 120127793 - 120131559

NM_011029 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
165120036883120036947
66231120037574120037739
232350120038275120038393
351596120039235120039480
597725120039885120040013
726891120040117120040282
8921861120040517120041486

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1245698Full LengthBC099601ribosomal protein SA
2651126Full LengthBC092041ribosomal protein SA
3600738Full LengthBC003829ribosomal protein SA
4240083Full LengthBC055886ribosomal protein SA
4500748Full LengthBC037195ribosomal protein SA
5151374Full LengthBC110285ribosomal protein SA
6433349Full LengthBC094902ribosomal protein SA
6476344Full LengthBC084677ribosomal protein SA
6820702Full LengthBC081461ribosomal protein SA

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035159  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011029 NP_035159   Ribosomal_S2

Related Sequences

 
mRNAGenPeptSwissProt
J02870 AAA39413 P14206
AF140348 AAD26866 P14206
BC003829 AAH03829 P14206
BC037195 AAH37195 P14206
BC055886 AAH55886 P14206
BC081461 AAH81461 P14206
BC084677 AAH84677 P14206
BC092041 AAH92041 P14206
BC094902 AAH94902 P14206
BC099601 AAH99601 P14206
BC110285 AAI10286 P14206
EU554633 ACB59248 B2CY77
AK010423 BAB26926 P14206
AK010985 BAB27306 P14206
AK011041 BAB27353 P14206
AK011043 BAB27355 P14206
AK075778 BAC35952 P14206
AK075790 BAC35960 P14206
AK082935 BAC38701 P14206
AK088954 BAC40671 P14206
AK134224 BAE22057 P14206
AK135488 BAE22550 P14206
AK160551 BAE35867 P14206
AK160625 BAE35924 P14206
AK165219 BAE38083 P14206
AK166697 BAE38953 P14206
AK166874 BAE39085 P14206
AK167132 BAE39278 P14206
X06406 CAA29696 P14206

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpsa NP_035159 R.norvegicus Rpsa 29236   NP_058834 100
H.sapiens RPSA 3921 Gene Info NP_001012321 99
D.melanogaster sta 31106   NP_476750 66
A.gambiae RSSA_ANOGA 1280866   XP_320736 63
C.elegans rps-0 175628   NP_497978 60
A.thaliana P40 843569   NP_177381 57
A.thaliana RPSAb 819637   NP_187128 57
P.falciparum PF10_0264 810421   XP_001347548 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta