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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pde1a, phosphodiesterase 1A, calmodulin-dependent
Sequence ID:NM_001009978
NM_001009979
NM_001159582
NM_016744
Entrez Gene ID:18573
Ensembl ID:ENSMUSG00000059173

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 D

Chromosomal Position (from UCSC)

Chromosomal Position:2: 79897064 - 80038615

 Exon Info From UCSC:
NM_001009978
NM_001009979
NM_001159582
NM_016744

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6842675Full LengthBC090628phosphodiesterase 1A, calmodulin-dependent

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001009979  NP_058024  NP_001009978  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001009978 NP_001009978 Q9JLL9   PDEase_I
PDEase_I_N
NM_001009979 NP_001009979 Q5I7S8   PDEase_I
PDEase_I_N
NM_001159582 NP_001153054      
NM_016744 NP_058024 Q8BRR9   PDEase_I
PDEase_I_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U56649 AAB03319 Q61481 EC 3.1.4.17
AF023529 AAB81952 Q61481 EC 3.1.4.17
AF159298 AAF63857 Q9JLL9  
BC090628 AAH90628 Q8BRR9  
AY845864 AAW31879 Q5I7S8  
AK021279 BAB32359 Q9D1V1  
AK043647 BAC31606 Q8BRR9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pde1a NP_001153054 R.norvegicus Pde1a 81529   NP_110498 97
H.sapiens PDE1A 5136 Gene Info NP_005010 93
D.melanogaster Pde1c 34594   NP_001137817 58
A.gambiae AgaP_AGAP008967 1279930   XP_319716 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)