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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Htr1d, 5-hydroxytryptamine (serotonin) receptor 1D
Sequence ID:NM_008309
Entrez Gene ID:15552
Ensembl ID:ENSMUSG00000070687

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4 66.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 136423523 - 136444398

NM_008309 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1252135979438135979689
2532908135997661136000316

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40039729Full LengthBC1035325-hydroxytryptamine (serotonin) receptor 1D
40039732Full LengthBC1035355-hydroxytryptamine (serotonin) receptor 1D
40039733Full LengthBC1035365-hydroxytryptamine (serotonin) receptor 1D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032335  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008309 NP_032335 Q61224 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
L20335 AAA16847 Q61224
BC103532 AAI03533 Q3ZB48
BC103535 AAI03536 Q3ZB48
BC103536 AAI03537 Q3ZB48
AK082016 BAC38393 Q61224

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Htr1d NP_032335 R.norvegicus Htr1d 25323   NP_036984 98
H.sapiens HTR1D 3352 Gene Info NP_000855 91
A.gambiae GPR5HT1B 1278365   XP_317820 49
D.melanogaster 5-HT1B 37191   NP_001163201 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)