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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm5a, lysine (K)-specific demethylase 5A
Sequence ID:NM_145997
Entrez Gene ID:214899
Ensembl ID:ENSMUSG00000030180

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F1|6 54.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 120439258 - 120440958

 Exon Info From UCSC:
NM_145997

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4036309IncompleteBC022581jumonji, AT rich interactive domain 1A (Rbp2 like)
30111462IncompleteBC080691jumonji, AT rich interactive domain 1A (Rbp2 like)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145997 NP_666109 Q3UXZ9  

Related Sequences

 
mRNAGenPeptSwissProt
BC010717 AAH10717 Q921T5
BC080691 AAH80691 Q3UXZ9
AK041568 BAE20593 Q3V3E9
AK133589 BAE21737 Q3U4V8
AK134200 BAE22050 Q3UZ11
AK135085 BAE22414 Q3UXZ9
AK139619 BAE24083 Q3UT97
AK144877 BAE26113 Q3UXZ9
AK154025 BAE32322 Q3U4V8
AK166055 BAE38548 Q3UXZ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm5a NP_666109 R.norvegicus Jarid1a 312678   XP_002729471 99
H.sapiens KDM5A 5927 Gene Info NP_001036068 97
A.gambiae AgaP_AGAP004854 1275113   XP_314337 50
D.melanogaster lid 33837   NP_523486 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)