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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Copb2, coatomer protein complex, subunit beta 2 (beta prime)
Sequence ID:NM_015827
Entrez Gene ID:50797
Ensembl ID:ENSMUSG00000032458

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 E3-F1

Chromosomal Position (from UCSC)

Chromosomal Position:9: 98580328 - 98588378

 Exon Info From UCSC:
NM_015827

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3499585Full LengthBC006675coatomer protein complex, subunit beta 2 (beta prime)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056642  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015827 NP_056642 O55029 WD40
Coatomer_WDAD

Related Sequences

 
mRNAGenPeptSwissProt
AF043120 AAB97760 O55029
BC006675 AAH06675 O55029
AK088064 BAC40125 O55029
AK153352 BAE31926 O55029

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Copb2 NP_056642 H.sapiens COPB2 9276 Gene Info NP_004757 98
A.gambiae AgaP_AGAP004798 1278426   XP_318012 69
D.melanogaster beta'Cop 45757   NP_524836 69
C.elegans F38E11.5 177779   NP_501671 67
A.thaliana AT1G79990 844339   NP_001154478 62
A.thaliana AT1G52360 841666   NP_175645 60
A.thaliana AT3G15980 820842   NP_001189908 57
N.crassa NCU07319 3878625   XP_962477 53
S.pombe sec27 2540050   NP_596811 48
S.cerevisiae SEC27 852740   NP_011378 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)