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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hp1bp3, heterochromatin protein 1, binding protein 3
Sequence ID:NM_001122896
NM_001122897
NM_010470
Entrez Gene ID:15441
Ensembl ID:ENSMUSG00000028759

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 138216634 - 138243142

 Exon Info From UCSC:
NM_001122896
NM_001122897
NM_010470

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3597151Full LengthBC020024heterochromatin protein 1, binding protein 3
3497662IncompleteBC004053heterochromatin protein 1, binding protein 3
5342936IncompleteBC107687heterochromatin protein 1, binding protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034600  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001122896 NP_001116368    
NM_001122897 NP_001116369    
NM_010470 NP_034600 Q3TEA8 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
BC004053 AAH04053 Q3TEA8
BC020024 AAH20024 Q3TEA8
BC107687 AAI07688 Q3B7C1
AK004938 BAB23683 Q3TEA8
AK028181 BAC25794 Q3TEA8
AK043260 BAC31507 Q3TEA8
AK075725 BAC35912 Q3TEA8
AK161041 BAE36164 Q3TEA8
AK166161 BAE38604 Q3TEA8
AK169740 BAE41340 Q3TEA8
X99642 CAA67961 Q3TEA8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hp1bp3 NP_001116369 R.norvegicus Hp1bp3 313647   NP_954539 94
H.sapiens HP1BP3 50809 Gene Info NP_057371 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)