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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rps3a, Ribosomal protein S3A
Sequence ID:NM_016959
Entrez Gene ID:20091
Ensembl ID:ENSMUSG00000028081

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 86137945 - 86142593

NM_016959 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181888594186185942031
1892988594240485942513
2995078594296185943169
5086958594516085945347
6967998594561985945722
8009608594642985946589

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2599128Full LengthBC106115ribosomal protein S3A
5025347Full LengthBC039659ribosomal protein S3A
5319512Full LengthBC084675ribosomal protein S3A
6820218Full LengthBC083338ribosomal protein S3A
6824188Full LengthBC081451ribosomal protein S3A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058655  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016959 NP_058655 P97351
Q9D1S3
Ribosomal_S3Ae

Related Sequences

 
mRNAGenPeptSwissProt
BC039659 AAH39659 Q564F3
P97351
BC081451 AAH81451 Q564F3
P97351
BC083338 AAH83338 Q564F3
P97351
BC084675 AAH84675 Q564F3
P97351
BC106115 AAI06116 Q564F3
P97351
AK003158 BAB22611 Q9D1S3
AK010605 BAB27055 Q564F3
P97351
AK012345 BAB28176 Q564F3
P97351
AK050610 BAC34341 Q564F3
P97351
AK088113 BAC40152 Q564F3
P97351
AK135318 BAE22486 Q564F3
P97351
AK146304 BAE27060 Q3UJU5
AK148513 BAE28594 Q564F3
P97351
AK150441 BAE29563 Q564F3
P97351
AK150796 BAE29859 Q564F3
P97351
AK150814 BAE29877 Q564F3
P97351
AK151429 BAE30393 Q3UAC2
AK151982 BAE30849 Q564F3
P97351
AK153480 BAE32029 Q3U5P8
AK159777 BAE35361 Q564F3
P97351
AK167512 BAE39587 Q564F3
P97351
AK167562 BAE39625 Q564F3
P97351
AK168240 BAE40190 Q564F3
P97351

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps3a NP_058655 M.musculus Gm10119 100043780 Gene Info XP_001480995 100
H.sapiens RPS3A 6189 Gene Info NP_000997 99
R.norvegicus Rps3a 29288   NP_058849 99
M.musculus Gm9000 668144 Gene Info XP_999639 99
A.gambiae RS3A_ANOGA 1274189   XP_313275 71
D.melanogaster RpS3A 43768   NP_524618 70
A.thaliana AT4G34670 829619   NP_195193 69
A.thaliana AT3G04840 819644   NP_187135 68
C.elegans rps-1 175584   NP_497910 65
N.crassa NCU01452 3872112   XP_955974 64
S.pombe rps101 2542817   NP_592828 61
S.pombe rps102 2541737   NP_593116 61
S.cerevisiae RPS1A 851162   NP_013546 60
S.cerevisiae RPS1B 854939   NP_013648 60
P.falciparum PFC1020c 814544   XP_001351300 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)