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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lmx1b, LIM homeobox transcription factor 1 beta
Sequence ID:NM_010725
Entrez Gene ID:16917
Ensembl ID:ENSMUSG00000038765

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2 21.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 33564635 - 33640511

NM_010725 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12583342005533420312
2594023342060133420744
4034693342219033422256
4705473342240433422481
5487293342266733422848
7309623342456933424801
96311493349500833495194
115012193349596133496030

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8733918Full LengthBC119169LIM homeobox transcription factor 1 beta
40129984Full LengthBC125469LIM homeobox transcription factor 1 beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034855  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010725 NP_034855 O88609 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF078166 AAC27793 O88609
BC119169 AAI19170 O88609
BC125469 AAI25470 O88609

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lmx1b NP_034855 H.sapiens LMX1B 4010 Gene Info NP_001167618 100
R.norvegicus Lmx1b 114501   XP_342420 100
C.elegans lim-6 180459   NP_508204 50
D.melanogaster CG32105 39406   NP_729801 45
A.gambiae AgaP_AGAP005137 3289904   XP_558527 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)