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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Usp4, ubiquitin specific peptidase 4 (proto-oncogene)
Sequence ID:NM_011678
Entrez Gene ID:22258
Ensembl ID:ENSMUSG00000032612

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9 60.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 108372692 - 108392259

 Exon Info From UCSC:
NM_011678

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3661165Full LengthBC011341ubiquitin specific peptidase 4 (proto-oncogene)
30433369IncompleteBC066865ubiquitin specific peptidase 4 (proto-oncogene)
30457732IncompleteBC066180ubiquitin specific peptidase 4 (proto-oncogene)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035808  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011678 NP_035808 P35123 EC 3.4.19.12 UCH
DUF1055

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L00681 AAB82339 P35123 EC 3.4.19.12
BC011341 AAH11341 Q921M8  
BC066180 AAH66180 Q6NXV6  
BC066865 AAH66865 Q6NXV6  
AK220512 BAD90302 Q5DTK8  
AK143582 BAE25450 P35123 EC 3.4.19.12
AK149964 BAE29198 P35123 EC 3.4.19.12
AK163201 BAE37232 Q3TQZ9  
AK164245 BAE37701 Q3TPN5  
AK169372 BAE41120 Q3TEX8  
AK169933 BAE41468 P35123 EC 3.4.19.12
AK171271 BAE42357 P35123 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Usp4 NP_035808 R.norvegicus Usp4 290864   NP_001128484 96
H.sapiens USP4 7375 Gene Info NP_003354 91
A.thaliana UBP5 818691   NP_565944 39
N.crassa NCU00480 3872312   XP_956165 38
S.pombe ubp12 2538990   NP_588530 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)